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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.369NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.367NWon-NGTTGCGACTACGTGATGAGG20552884928830R-18062.4South Korea
B.1.595NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21584South Korea
B.1.240NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.192NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.39.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LP.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.529 (Omicron)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.41.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.33 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.14.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.14.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1 (Omicron)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.17.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.99.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.52NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.42NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.39.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.58.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.441NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.509NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.293NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.225NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.637NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.26 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.103 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used