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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.56NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.10.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.9.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.76NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.107NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.54NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.120 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCUNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.27.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KB.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19777.6South Korea
JN.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.51.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.526 (Iota)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.621 (Mu)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.9.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.34 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.47 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1.17 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.126 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.48 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.116.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.52 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.13 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.35 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.122 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.55.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LQ.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.62NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used