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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.307NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.171NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.57NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.67NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.279NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.67NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.2.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DB.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CZ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.47NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.15.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.9.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FA.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
ER.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21584South Korea
BA.5.2.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CC.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BZ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAY.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used