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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.102NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GN.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HR.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HP.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
GS.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCF.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
JC.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.105NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.9.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GM.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JH.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.34.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.2.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCF.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCCNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.21.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FP.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.92NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.42NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
FL.35.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.4.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.99NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FE.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.20.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.110NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used