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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.459NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.117NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.381NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.237NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.382NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FD.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.44NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GN.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FW.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBLNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.466.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Q.1 (Alpha)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.46 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.99 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.120.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.528NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.91 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.617NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.58NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.10.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KC.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KL.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HC.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-22468.7South Korea
B.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.507NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.36NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.222NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.470NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.31 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.51 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.122.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.40.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.10.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HG.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used