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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.376NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.607NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.163NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.337NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.158NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.602NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.289NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.7.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.178NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.208NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.197NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.491NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21359South Korea
P.1.8 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.75.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.347NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.195NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.321NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.379NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.78NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.231NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.49NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.67NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.190NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.11.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDLNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.29.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.29.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BC.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.10.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.299NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.149NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.300NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.179NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.125NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
G.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.438NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.120NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used