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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.571NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.55 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAMNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.239NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.493NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.351.2 (Beta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.640.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.352NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.251NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HC.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCJNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FZ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.497NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EN.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.30 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.85 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBFNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.11.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.367NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.385NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.244NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EP.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.17.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.6.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.141NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.591NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.468NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.131 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.586NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.366NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.380NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.100NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.43.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EU.1.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used