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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.424NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AF.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21584South Korea
B.1.177.89NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
M.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.333NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.429NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.463NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
U.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.373NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.80NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.433NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.574NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.355NWon-NGTTGCGACTACGTGATGAGG20552884928830R-17881.2South Korea
GA.7.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.403NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.72NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.85NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.66 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.72 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.133 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.5.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.43.7 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.33.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.7.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.10.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KG.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HA.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.351 (Beta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.36NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HZ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.19.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.5.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FP.2.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used