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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.600NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1.12 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.525 (Eta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.6 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.5.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1.7 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.119.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.25.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.122.6 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.621.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.125 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.103.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.92 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.122.4 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.101 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.80NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.134NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CZ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BY.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.42NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAY.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.46NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.71NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.445NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.21 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.199NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.112NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.123NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.143NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.48NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.46.6.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.112.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.360NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.49NWon-NGTTGCGACTACGTGATGAGG20552884928830R-2683.5South Korea
B.1.160.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used