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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.307NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.171NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.57NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.67NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.279NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.67NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.39.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.4.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.73 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.60 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.124.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.13.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XYNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.46.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1.16 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.10.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.34.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.2.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.9.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XWNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDJNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.36.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.86.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.46NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.58 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21584South Korea
BA.2.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CP.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBGNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used