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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
LB.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.81NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBL.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LP.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.529 (Omicron)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.41.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDQNWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
B.1.502NWon-NGTTGCGACTACGTGATGAGG20552884928830R-18909.9South Korea
B.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.285NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.582NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19194.1South Korea
B.1.580NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19194.1South Korea
B.1.306NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.280NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.329NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.52NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.42NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.39.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.58.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.441NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.509NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.293NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.225NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.637NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.26 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used