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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.50SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.170SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.232SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.84SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.76SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.301SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.269SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.234SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.5.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.323SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.105 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
AY.4.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.9 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.398SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.94 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.41 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.71SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.142SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.166SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.11 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.34.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-10681.4South Korea
C.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.82 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.23.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.466.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.213SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.56 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.39.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.91.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.14 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.3.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.41SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.375SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.75.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
XBHSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
BQ.1.1.78SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.9.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.64SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used