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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
CB.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BR.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CL.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EF.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BR.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.41SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.527SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
C.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.500SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.147SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.487SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.68SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.121SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AS.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-19106.5South Korea
B.1.1.115SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.75.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBF.8.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAUSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAY.1.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.25.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XADSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XABSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FT.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XALSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBWSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.15.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.59 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBRSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DJ.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AZ.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.193SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FP.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DA.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used