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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.371SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.154SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.41SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.137SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.446SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.76 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.398SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.163SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.3 (Theta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.254SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.39.1.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.418SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.9.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.122SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAJSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.431SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.168SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Q.6 (Alpha)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AZ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBF.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.343SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.17 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.25.1.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.409SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.83SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.310SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.362.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.162SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
Y.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.86SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.353SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.407SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.182SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.218SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XBB.1.12.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.22 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.128SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.123 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.71SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.12.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DN.1.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used