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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.1.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BE.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
KB.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.23 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.9 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.74 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.621.1 (Mu)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.67SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
CK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BA.5.2.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BF.7.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CJ.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BQ.1.1.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BA.4.6.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.7.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
BA.5.3.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BF.7.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
FA.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
B.1.234SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.231SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.243SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.517SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.291SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.349SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.314SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.132SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.99.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KT.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
JC.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
B.1.334SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.359SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.302SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.222SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.434SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.467SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.110.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EU.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.1.5.97SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.3.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used