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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.177.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.326SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.558SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.518SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.368SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.404SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.306SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.328SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.533SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.525SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.480SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.214SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.117SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.157SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.187SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.213SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.341SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.89SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-17259.9South Korea
B.1.177.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.379SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.240SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.240.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.121.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.46SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.44SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.389SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.549SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
CP.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.3.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EF.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BW.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.599SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.128SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.451SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.313SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.402SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used