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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.543SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.139SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.221SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.362SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.265SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.585SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.351SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.95 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.189SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.545SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.482SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.3.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.207SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.604SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.111SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.619SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.36.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.36.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.23.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.316SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.436SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.561SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.605SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.596SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.565SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.361SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.101SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.478SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.86SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.3.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LF.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KP.2.3.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LQ.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
MD.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
MK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used