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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.405SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.282SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.228SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.174SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.88 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.3.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KN.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.61SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XASSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.3.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.1.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DN.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.3.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.4.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BW.1.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.312SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.13.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.220SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.142SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.523SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FW.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HN.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BS.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.75.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CA.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.453SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.637.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.79SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BG.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.1.2.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1.11.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.32.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.8.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HC.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.93 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.31.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GW.5.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.2.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used