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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.160.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AT.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.199SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.112SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
B.1.1.123SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.143SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.46.6.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.112.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.360SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.49SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.385SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.384SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.338SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BG.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.20.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XVSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.38.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.4.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.80SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.219SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.208SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.125.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.78 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.159SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.5 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XBC.1.6.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
FP.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
BA.2.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.177SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.301SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.308SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.210SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.325SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.590SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.116SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.496SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.438.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.49 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.198SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.366SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.441SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.416SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.63SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.263SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used