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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.184SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.187SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
D.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.110.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.342SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.214SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.284SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.351.3 (Beta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.318SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
R.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.29 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
ML.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.283SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.96SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.547SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.247SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.205SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.110SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.434SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.181SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.6.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CQ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.38.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.19.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.500SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.511SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.428.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17259.9South Korea
B.1.506SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.482SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.335SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.499.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.116SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.528SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.175SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used