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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
HK.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HW.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JF.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JP.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FE.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.6.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCLSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCTSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.26.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCPSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.6.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JF.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDESWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KE.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HF.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used