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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.2.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DE.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.333SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.437SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.452SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.400SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.16 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.37 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.336SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.317SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.6.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.75.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.26.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HD.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used