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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.4.6.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EJ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.31.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.618SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.458SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.264.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.190SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.552SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.510SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.91SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.227SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.555SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.513SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XACSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
XZSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.36.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.242SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.449SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.152SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.146SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
D.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.81SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.64SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.327SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.396SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.129SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used