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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.258.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.445SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.21 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.199SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.112SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.123SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.143SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.6.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.112.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.360SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.385SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.384SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.338SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BG.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.20.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.38.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.80SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.219SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.208SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.125.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.78 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.159SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.6.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.177SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.301SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.308SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.210SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.325SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.590SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.116SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.496SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used