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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.382SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.356SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.376SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.607SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.163SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.337SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.158SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.602SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.289SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.21.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.5.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EE.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ES.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.6.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.141SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.591SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.468SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.131 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.586SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.366SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.380SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.148SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.100SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.43.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EK.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.66SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.15.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.273SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.13 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.358SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used