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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.309SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.105SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.610SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.10 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.286SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.369SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.87SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.39.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.164SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.275SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.81SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.419SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.151SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GP.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CR.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.201SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.560SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.26.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used