Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.3.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.620SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDMSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.2.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.16 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.10.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.34.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XWSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
JN.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.36.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.58 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.98 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
XDTSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.617.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.109 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.8 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.617.1 (Kappa)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.4 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.442SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used