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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.580SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.306SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.280SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.329SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KB.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.39.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.58.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.441SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.509SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.293SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.225SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.637SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.26 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.103 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KE.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.56SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.64SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.8 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.90 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
BA.2.87SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.575.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used