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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
JN.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.43.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.64SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.47.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.7.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.42.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.48.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LR.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used