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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.261SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.3.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-2756.79South Korea
EE.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.39.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.233SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.320SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.635SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.19 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.47.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DJ.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BW.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.74SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.6.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.238SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.68SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used