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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.16.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
DN.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AY.84 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.99SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
XAY.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.10.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EP.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.15.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.15.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
FL.4.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.631SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.627SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.519SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.514SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.87SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAPSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.15 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.113SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.423SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.550SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used