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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.25.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XADSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XABSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XALSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBWSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.15.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.59 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBRSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DJ.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.193SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBJ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CL.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.626SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.629SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.61 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.75.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.524SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.68 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used