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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
Y.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.86SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.353SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.407SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.182SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.218SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.12.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.22 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.128SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.123 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.12.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XRSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.350.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BS.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.161SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
B.1.1.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.75SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.411SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.217SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.17 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used