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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XAVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.97SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.67SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.277SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.28 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.272SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.371SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.154SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.4.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.137SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.446SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.76 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.398SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.163SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.3 (Theta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.254SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.1.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.418SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.9.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.122SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.431SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.168SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.6 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.343SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.17 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.25.1.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.409SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.83SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.310SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.362.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.162SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used