Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
C.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.421SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.364SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.61SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JB.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.30.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.68SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AY.43.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.9 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.3 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.16.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
B.1.372SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.236SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.395SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.120.2.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.416.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.532SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.408SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
S.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.215SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.462SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.218SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.74SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.237SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.254SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used