Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
CH.1.1.23NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.640NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-21398.1Germany
BA.1.1.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.559SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.406SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ER.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.640SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
Q.7 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.460SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.262SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351.5 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-1215.87South Korea
FL.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.251SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.256SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.248SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.425SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.144SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.288SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.249SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.378SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.97SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.439SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.408SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.256SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.405SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.296SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.412SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used