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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.161NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.69 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.134NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.393NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.381NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
C.32NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AE.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.516NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.526NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.279NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AE.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
N.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.345NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.53NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.450NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.334NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.589NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.335NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.169NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.43NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.42NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AE.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.3.21NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
A.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.530NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.1.17.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.75.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CH.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.570NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.633NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DD.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.136NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.23NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.370NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.118NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.137NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.309NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.632NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.72NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.108NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.332NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.42.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.1.73NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DW.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BR.5.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.75.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XAKNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XAANCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.30NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.1.50NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used