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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.80 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.43.8 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.128 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
A.21NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.220NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.58NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.438NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.257NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.5.4 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.323NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.15NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.105 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.4.4 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.4.9 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.398NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.94 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HK.18NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.18NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.4.10 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.47NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.16NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.41 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.71NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AS.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.142NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.166NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.4.11 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.34.2 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.315NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.204NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.50NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.170NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.232NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.84NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.76NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.301NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.269NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.165NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.12NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
V.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.149NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.413NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.9.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.107NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used