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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XGNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.63NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.8.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EC.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XLNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.87 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.23.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XNNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.111 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.37NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.57NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.54NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.610NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.10 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.286NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.369NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.69NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.87NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used