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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.159NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.43.5 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.6.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.177NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.301NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.308NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.210NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.325NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.590NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.116NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.496NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.438.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.49 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.38.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.76NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.10.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XATNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.3.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ED.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used