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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FG.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.45NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.34.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.79NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FU.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.37NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAY.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.60NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CJ.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HZ.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.101NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EY.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.35NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.44NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FU.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EF.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.84NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EU.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used