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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.4 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.43 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.98.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.127 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.83 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.3.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.28.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.65NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.39.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.4.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
JN.1.7.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDK.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.46NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.48NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.47.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.4.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.7.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.42.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.48.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KV.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used