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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.13 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.35 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.122 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.55.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LQ.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.62NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDKNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.9.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.76NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.107NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.172NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.110NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.320NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.91NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KB.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.51.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDD.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.526 (Iota)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.621 (Mu)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.9.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.43.4 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.57 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used