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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.2.3.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EU.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
EU.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.2.3.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GF.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
GS.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GE.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.93SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.93SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.2.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.5.1.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
XBB.1.19.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.1.19.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.479SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.479SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.437SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.437SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.371SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.371SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.4.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.6.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used