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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.26.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EW.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EW.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBPSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBPSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.28SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CL.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CL.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBMSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBMSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
BF.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CB.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CB.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BR.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CL.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CL.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.10.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.10.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used