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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FK.1.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FK.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DR.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DR.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.219SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.219SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.208SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.208SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.125.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.125.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.78 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.78 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.159SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.159SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.5 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.43.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.6.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
XBC.1.6.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.366SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.366SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.441SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.441SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.416SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.416SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.63SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.263SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.263SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.135SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.135SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.6.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.47.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.47.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used