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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.467SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.484SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.484SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.435SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.435SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.445SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.445SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.124SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.124SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.384SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.384SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAQSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
BA.2.3.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.258.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.370SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.370SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.118SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.118SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.137SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.137SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.309SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.309SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.157SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.157SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.176SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.176SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.3.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.3.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.391SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.391SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.393SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.393SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.432SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.432SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.388SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.388SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.112SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.112SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.274SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
B.1.274SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.515SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.515SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.428.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used