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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.4.11 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.34.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-10681.4South Korea
AY.34.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.50SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.52SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.10 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
AY.4.10 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.41 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.41 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.76SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.76SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.301SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.301SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.269SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.269SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.234SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.234SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Z.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Z.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BV.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.4.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.7.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
GS.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XWSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XWSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
JN.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.13.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used