Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.105 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.9 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.4.9 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.469SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.469SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.62SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.80 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.80 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.8 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.8 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.128 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.128 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.220SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.220SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.58SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.438SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.438SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.257SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.257SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.5.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.275SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.275SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.258.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.58SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.81SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.81SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.419SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.419SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.151SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.151SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-5038.54South Korea
B.1.36.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.177.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.311SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.311SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.93SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used