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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.382SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.395SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.395SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.323SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.323SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FU.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FU.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
FY.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FN.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.74SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.74SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.405SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.405SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.282SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.282SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.228SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.228SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.174SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.174SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.88 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.88 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.106 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.106 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.2.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.312SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.312SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.13.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.13.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.220SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.220SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.142SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.142SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.523SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.523SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.36.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.36.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.418SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.418SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.389SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.389SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-20215.9South Korea
B.1.177.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.363SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.363SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used